J3_4W29_001

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4W29|1|AA|U|871, 4W29|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1977

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4W29|1|AA|C|826
4W29|1|AA|U|827
4W29|1|AA|A|828
4W29|1|AA|G|829
*
4W29|1|AA|C|857
4W29|1|AA|G|858
4W29|1|AA|A|859
4W29|1|AA|A|860
4W29|1|AA|G|861
*
4W29|1|AA|C|868
4W29|1|AA|G|869
4W29|1|AA|U|870
4W29|1|AA|U|871
4W29|1|AA|A|872
4W29|1|AA|A|873
4W29|1|AA|G|874

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AV

mRNA