J3_4W29_008

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4W29|1|AA|U|1240, 4W29|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_008 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.247

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

4W29|1|AA|C|1237
4W29|1|AA|A|1238
4W29|1|AA|A|1239
4W29|1|AA|U|1240
4W29|1|AA|G|1241
*
4W29|1|AA|C|1296
4W29|1|AA|C|1297
4W29|1|AA|C|1298
4W29|1|AA|A|1299
4W29|1|AA|G|1300
4W29|1|AA|U|1301
4W29|1|AA|U|1302
4W29|1|AA|C|1303
*
4W29|1|AA|G|1334
4W29|1|AA|C|1335
4W29|1|AA|C|1336
4W29|1|AA|G|1337

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13