J3_4W29_038
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4W29|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W29_038 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.2419
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4W29|1|AA|U|672
4W29|1|AA|G|673
*
4W29|1|AA|C|717
4W29|1|AA|G|718
4W29|1|AA|C|719
4W29|1|AA|C|720
4W29|1|AA|G|721
4W29|1|AA|A|722
4W29|1|AA|U|723
4W29|1|AA|G|724
4W29|1|AA|G|725
*
4W29|1|AA|C|732
4W29|1|AA|A|733
4W29|1|AA|G|734
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
- Chain AV
- mRNA
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