J3_4W29_067

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4W29|1|DA|U|504, 4W29|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_067 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.3123

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4W29|1|DA|G|30
4W29|1|DA|C|31
*
4W29|1|DA|G|474
4W29|1|DA|U|475
4W29|1|DA|G|476
4W29|1|DA|A|477
4W29|1|DA|A|478
4W29|1|DA|A|479
4W29|1|DA|A|480
4W29|1|DA|G|481
4W29|1|DA|A|482
4W29|1|DA|A|483
4W29|1|DA|C|484
*
4W29|1|DA|G|496
4W29|1|DA|A|497
4W29|1|DA|G|498
4W29|1|DA|U|499
4W29|1|DA|G|500
4W29|1|DA|A|501
4W29|1|DA|A|502
4W29|1|DA|A|503
4W29|1|DA|U|504
4W29|1|DA|A|505
4W29|1|DA|G|506
4W29|1|DA|A|507
4W29|1|DA|G|508
4W29|1|DA|C|509
4W29|1|DA|C|510

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24