J3_4WQY_036

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQY|1|AA|U|529, 4WQY|1|AA|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_036 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.051

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQY|1|AA|G|30
4WQY|1|AA|C|31
*
4WQY|1|AA|G|500
4WQY|1|AA|U|501
4WQY|1|AA|G|502
4WQY|1|AA|A|503
4WQY|1|AA|A|504
4WQY|1|AA|A|505
4WQY|1|AA|A|506
4WQY|1|AA|G|507
4WQY|1|AA|A|508
4WQY|1|AA|A|509
4WQY|1|AA|C|510
*
4WQY|1|AA|G|521
4WQY|1|AA|A|522
4WQY|1|AA|G|523
4WQY|1|AA|U|524
4WQY|1|AA|G|525
4WQY|1|AA|A|526
4WQY|1|AA|A|527
4WQY|1|AA|A|528
4WQY|1|AA|U|529
4WQY|1|AA|A|530
4WQY|1|AA|G|531
4WQY|1|AA|A|532
4WQY|1|AA|G|533
4WQY|1|AA|C|534
4WQY|1|AA|C|535

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24