J3_4WQY_079

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WQY|1|DA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQY_079 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1802

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WQY|1|DA|C|990
4WQY|1|DA|U|991
4WQY|1|DA|U|992
4WQY|1|DA|G|993
4WQY|1|DA|A|994
4WQY|1|DA|C|995
4WQY|1|DA|A|996
4WQY|1|DA|U|997
*
4WQY|1|DA|A|1044
4WQY|1|DA|C|1045
4WQY|1|DA|A|1046
4WQY|1|DA|G|1047
*
4WQY|1|DA|C|1210
4WQY|1|DA|U|1211
4WQY|1|DA|U|1212
4WQY|1|DA|A|1213
4WQY|1|DA|C|1214
4WQY|1|DA|G|1215

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DN

30S ribosomal protein S14 type Z