J3_4WT8_008

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WT8|1|Bb|U|849, 4WT8|1|Bb|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_008 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0716

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WT8|1|Bb|C|810
4WT8|1|Bb|U|811
4WT8|1|Bb|A|812
4WT8|1|Bb|G|813
*
4WT8|1|Bb|C|835
4WT8|1|Bb|G|836
4WT8|1|Bb|A|837
4WT8|1|Bb|A|838
4WT8|1|Bb|G|839
*
4WT8|1|Bb|C|846
4WT8|1|Bb|G|847
4WT8|1|Bb|U|848
4WT8|1|Bb|U|849
4WT8|1|Bb|A|850
4WT8|1|Bb|A|851
4WT8|1|Bb|G|852

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BA

30S ribosomal protein S2

Chain BH

30S ribosomal protein S8