J3_4WT8_021

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WT8|1|C1|A|2529, 4WT8|1|C1|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_021 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1362

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|C1|C|2528
4WT8|1|C1|A|2529
4WT8|1|C1|U|2530
4WT8|1|C1|C|2531
*
4WT8|1|C1|G|2556
4WT8|1|C1|U|2557
4WT8|1|C1|U|2558
*
4WT8|1|C1|A|2572
4WT8|1|C1|U|2573
4WT8|1|C1|U|2574
4WT8|1|C1|A|2575
4WT8|1|C1|A|2576
4WT8|1|C1|A|2577
4WT8|1|C1|G|2578

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CM

50S ribosomal protein L13

Chain CN

50S ribosomal protein L14