J3_4WT8_031

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4WT8|1|Ab|C|49, 4WT8|1|Ab|A|51, 4WT8|1|Ab|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT8_031 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0886

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WT8|1|Ab|G|47
4WT8|1|Ab|C|48
4WT8|1|Ab|C|49
4WT8|1|Ab|U|50
4WT8|1|Ab|A|51
4WT8|1|Ab|A|52
4WT8|1|Ab|G|53
*
4WT8|1|Ab|U|355
4WT8|1|Ab|A|356
4WT8|1|Ab|G|357
4WT8|1|Ab|G|358
4WT8|1|Ab|A|359
4WT8|1|Ab|A|360
4WT8|1|Ab|U|361
4WT8|1|Ab|C|362
4WT8|1|Ab|U|363
*
4WT8|1|Ab|A|389
4WT8|1|Ab|G|390
4WT8|1|Ab|C|391

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9