J3_4WWW_020

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4WWW|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_020 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0553

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4WWW|1|XA|C|826
4WWW|1|XA|U|827
4WWW|1|XA|U|828
4WWW|1|XA|G|829
*
4WWW|1|XA|C|857
4WWW|1|XA|G|858
4WWW|1|XA|G|859
4WWW|1|XA|A|860
4WWW|1|XA|G|861
*
4WWW|1|XA|C|868
4WWW|1|XA|G|869
4WWW|1|XA|U|870
4WWW|1|XA|U|871
4WWW|1|XA|A|872
4WWW|1|XA|A|873
4WWW|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8

Chain XU

30S ribosomal protein S21