J3_4WWW_028

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4WWW|1|XA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_028 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3103

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WWW|1|XA|C|1237
4WWW|1|XA|A|1238
4WWW|1|XA|A|1239
4WWW|1|XA|U|1240
4WWW|1|XA|G|1241
*
4WWW|1|XA|C|1296
4WWW|1|XA|G|1297
4WWW|1|XA|U|1298
4WWW|1|XA|A|1299
4WWW|1|XA|G|1300
4WWW|1|XA|U|1301
4WWW|1|XA|C|1302
4WWW|1|XA|C|1303
*
4WWW|1|XA|G|1334
4WWW|1|XA|U|1335
4WWW|1|XA|C|1336
4WWW|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13