J3_4WWW_040

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4WWW|1|QA|C|48, 4WWW|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WWW_040 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0697

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WWW|1|QA|G|46
4WWW|1|QA|C|47
4WWW|1|QA|C|48
4WWW|1|QA|U|49
4WWW|1|QA|A|50
4WWW|1|QA|A|51
4WWW|1|QA|C|52
*
4WWW|1|QA|G|359
4WWW|1|QA|G|360
4WWW|1|QA|G|361
4WWW|1|QA|G|362
4WWW|1|QA|A|363
4WWW|1|QA|A|364
4WWW|1|QA|U|365
4WWW|1|QA|A|366
4WWW|1|QA|U|367
*
4WWW|1|QA|A|393
4WWW|1|QA|G|394
4WWW|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16