J3_4XEJ_002
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_002 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.152
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4XEJ|1|A16S|U|943
4XEJ|1|A16S|G|944
4XEJ|1|A16S|G|945
4XEJ|1|A16S|A|946
*
4XEJ|1|A16S|U|1235
4XEJ|1|A16S|A|1236
4XEJ|1|A16S|C|1237
*
4XEJ|1|A16S|G|1337
4XEJ|1|A16S|G|1338
4XEJ|1|A16S|A|1339
4XEJ|1|A16S|A|1340
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AIRE
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain AS09
- 30S ribosomal protein S9
- Chain AS13
- 30S ribosomal protein S13
- Chain ATHX
- 30S ribosomal protein Thx
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