J3_4XEJ_017
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4XEJ|1|B16S|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_017 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.096
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4XEJ|1|B16S|C|826
4XEJ|1|B16S|U|827
4XEJ|1|B16S|A|828
4XEJ|1|B16S|G|829
*
4XEJ|1|B16S|C|857
4XEJ|1|B16S|G|858
4XEJ|1|B16S|A|859
4XEJ|1|B16S|A|860
4XEJ|1|B16S|G|861
*
4XEJ|1|B16S|C|868
4XEJ|1|B16S|G|869
4XEJ|1|B16S|U|870
4XEJ|1|B16S|U|871
4XEJ|1|B16S|A|872
4XEJ|1|B16S|A|873
4XEJ|1|B16S|G|874
Current chains
- Chain B16S
- 16S ribosomal RNA
Nearby chains
- Chain BS02
- 30S ribosomal protein S2
- Chain BS08
- 30S ribosomal protein S8
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