J3_4XEJ_039
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4XEJ|1|A16S|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_039 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1176
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4XEJ|1|A16S|U|672
4XEJ|1|A16S|G|673
*
4XEJ|1|A16S|C|717
4XEJ|1|A16S|G|718
4XEJ|1|A16S|C|719
4XEJ|1|A16S|C|720
4XEJ|1|A16S|G|721
4XEJ|1|A16S|A|722
4XEJ|1|A16S|U|723
4XEJ|1|A16S|G|724
4XEJ|1|A16S|G|725
*
4XEJ|1|A16S|C|732
4XEJ|1|A16S|A|733
4XEJ|1|A16S|G|734
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AL02
- 50S ribosomal protein L2
- Chain AS06
- 30S ribosomal protein S6
- Chain AS11
- 30S ribosomal protein S11
- Chain AS15
- 30S ribosomal protein S15
- Chain AS18
- 30S ribosomal protein S18
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