J3_4XEJ_065
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4XEJ|1|B23S|U|504, 4XEJ|1|B23S|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4XEJ_065 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.258
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4XEJ|1|B23S|G|30
4XEJ|1|B23S|C|31
*
4XEJ|1|B23S|G|474
4XEJ|1|B23S|U|475
4XEJ|1|B23S|G|476
4XEJ|1|B23S|A|477
4XEJ|1|B23S|A|478
4XEJ|1|B23S|A|479
4XEJ|1|B23S|A|480
4XEJ|1|B23S|G|481
4XEJ|1|B23S|A|482
4XEJ|1|B23S|A|483
4XEJ|1|B23S|C|484
*
4XEJ|1|B23S|G|496
4XEJ|1|B23S|A|497
4XEJ|1|B23S|G|498
4XEJ|1|B23S|U|499
4XEJ|1|B23S|G|500
4XEJ|1|B23S|A|501
4XEJ|1|B23S|A|502
4XEJ|1|B23S|A|503
4XEJ|1|B23S|U|504
4XEJ|1|B23S|A|505
4XEJ|1|B23S|G|506
4XEJ|1|B23S|A|507
4XEJ|1|B23S|G|508
4XEJ|1|B23S|C|509
4XEJ|1|B23S|C|510
Current chains
- Chain B23S
- 23S ribosomal RNA
Nearby chains
- Chain BL20
- 50S ribosomal protein L20
- Chain BL22
- 50S ribosomal protein L22
- Chain BL23
- 50S ribosomal protein L23
- Chain BL24
- 50S ribosomal protein L24
Coloring options: