J3_4Y4O_036
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4Y4O|1|1A|U|529, 4Y4O|1|1A|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4O_036 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0354
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4Y4O|1|1A|G|30
4Y4O|1|1A|C|31
*
4Y4O|1|1A|G|500
4Y4O|1|1A|U|501
4Y4O|1|1A|G|502
4Y4O|1|1A|A|503
4Y4O|1|1A|A|504
4Y4O|1|1A|A|505
4Y4O|1|1A|A|506
4Y4O|1|1A|G|507
4Y4O|1|1A|A|508
4Y4O|1|1A|A|509
4Y4O|1|1A|C|510
*
4Y4O|1|1A|G|521
4Y4O|1|1A|A|522
4Y4O|1|1A|G|523
4Y4O|1|1A|U|524
4Y4O|1|1A|G|525
4Y4O|1|1A|A|526
4Y4O|1|1A|A|527
4Y4O|1|1A|A|528
4Y4O|1|1A|U|529
4Y4O|1|1A|A|530
4Y4O|1|1A|G|531
4Y4O|1|1A|A|532
4Y4O|1|1A|G|533
4Y4O|1|1A|C|534
4Y4O|1|1A|C|535
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
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