J3_4Y4O_037
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4Y4O|1|1A|U|474, 4Y4O|1|1A|C|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4Y4O_037 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0394
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4Y4O|1|1A|C|32
4Y4O|1|1A|U|33
4Y4O|1|1A|C|34
4Y4O|1|1A|G|35
*
4Y4O|1|1A|C|471
4Y4O|1|1A|G|472
4Y4O|1|1A|A|473
4Y4O|1|1A|U|474
4Y4O|1|1A|A|475
4Y4O|1|1A|G|476
4Y4O|1|1A|C|477
4Y4O|1|1A|G|478
4Y4O|1|1A|C|479
4Y4O|1|1A|A|480
4Y4O|1|1A|C|481
4Y4O|1|1A|C|482
4Y4O|1|1A|A|483
4Y4O|1|1A|G|484
4Y4O|1|1A|U|485
4Y4O|1|1A|A|486
4Y4O|1|1A|C|487
*
4Y4O|1|1A|G|494
4Y4O|1|1A|G|495
4Y4O|1|1A|A|496
4Y4O|1|1A|A|497
4Y4O|1|1A|A|498
4Y4O|1|1A|G|499
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1X
- 50S ribosomal protein L23
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