J3_4Y4O_070

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4Y4O|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4O_070 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.15

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4Y4O|1|2a|C|990
4Y4O|1|2a|U|991
4Y4O|1|2a|U|992
4Y4O|1|2a|G|993
4Y4O|1|2a|A|994
4Y4O|1|2a|C|995
4Y4O|1|2a|A|996
4Y4O|1|2a|U|997
*
4Y4O|1|2a|A|1044
4Y4O|1|2a|C|1045
4Y4O|1|2a|A|1046
4Y4O|1|2a|G|1047
*
4Y4O|1|2a|C|1210
4Y4O|1|2a|U|1211
4Y4O|1|2a|U|1212
4Y4O|1|2a|A|1213
4Y4O|1|2a|C|1214
4Y4O|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z