J3_5AJ0_006

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

5AJ0|1|A2|A|2375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ0_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.163

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5AJ0|1|A2|C|2372
5AJ0|1|A2|G|2373
5AJ0|1|A2|A|2374
5AJ0|1|A2|A|2375
5AJ0|1|A2|G|2376
5AJ0|1|A2|U|2377
5AJ0|1|A2|G|2378
*
5AJ0|1|A2|C|2784
5AJ0|1|A2|A|2785
5AJ0|1|A2|A|2786
*
5AJ0|1|A2|U|2798
5AJ0|1|A2|C|2799
5AJ0|1|A2|U|2800
5AJ0|1|A2|G|2801

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain Ag

60S ribosomal protein L34