J3_5AJ0_012

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

5AJ0|1|A2|A|4426, 5AJ0|1|A2|U|4427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ0_012 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.136

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|U|4425
5AJ0|1|A2|A|4426
5AJ0|1|A2|U|4427
5AJ0|1|A2|C|4428
*
5AJ0|1|A2|G|4453
5AJ0|1|A2|U|4454
5AJ0|1|A2|U|4455
*
5AJ0|1|A2|A|4469
5AJ0|1|A2|C|4470
5AJ0|1|A2|U|4471
5AJ0|1|A2|A|4472
5AJ0|1|A2|A|4473
5AJ0|1|A2|U|4474
5AJ0|1|A2|A|4475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L13a

Chain AV

60S ribosomal protein L23