J3_5AJ0_022

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5AJ0|1|B1|G|1274, 5AJ0|1|B1|G|1507, 5AJ0|1|B1|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ0_022 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1572

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5AJ0|1|B1|C|1272
5AJ0|1|B1|C|1273
5AJ0|1|B1|G|1274
5AJ0|1|B1|G|1275
5AJ0|1|B1|A|1276
5AJ0|1|B1|C|1277
*
5AJ0|1|B1|G|1320
5AJ0|1|B1|G|1321
5AJ0|1|B1|G|1322
5AJ0|1|B1|U|1323
5AJ0|1|B1|G|1324
*
5AJ0|1|B1|U|1504
5AJ0|1|B1|U|1505
5AJ0|1|B1|A|1506
5AJ0|1|B1|G|1507
5AJ0|1|B1|A|1508
5AJ0|1|B1|U|1509
5AJ0|1|B1|G|1510

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a