J3_5AJ0_034

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ0_034 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.274

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5AJ0|1|A2|U|2554
5AJ0|1|A2|G|2555
*
5AJ0|1|A2|C|2564
5AJ0|1|A2|G|2565
5AJ0|1|A2|A|2566
5AJ0|1|A2|C|2567
5AJ0|1|A2|C|2568
*
5AJ0|1|A2|G|2735
5AJ0|1|A2|A|2736

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

60S ribosomal protein L27

Chain Ag

60S ribosomal protein L34