J3_5AKA_005

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0892

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5AKA|1|B|C|1298
5AKA|1|B|G|1299
5AKA|1|B|G|1300
5AKA|1|B|A|1301
5AKA|1|B|A|1302
5AKA|1|B|G|1303
*
5AKA|1|B|C|1625
5AKA|1|B|A|1626
5AKA|1|B|G|1627
*
5AKA|1|B|C|1639
5AKA|1|B|A|1640
5AKA|1|B|A|1641
5AKA|1|B|G|1642

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17