J3_5AN9_003

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAACA

Length

14 nucleotides

Bulged bases

5AN9|1|N|A|3220, 5AN9|1|N|U|3221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AN9_003 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0974

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

5AN9|1|N|U|3219
5AN9|1|N|A|3220
5AN9|1|N|U|3221
5AN9|1|N|C|3222
*
5AN9|1|N|G|3247
5AN9|1|N|U|3248
5AN9|1|N|U|3249
*
5AN9|1|N|A|3263
5AN9|1|N|C|3264
5AN9|1|N|U|3265
5AN9|1|N|A|3266
5AN9|1|N|A|3267
5AN9|1|N|C|3268
5AN9|1|N|A|3269

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L3

Chain E

60S RIBOSOMAL PROTEIN L23