J3_5APN_008
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 5APN|1|5|G|2549, 5APN|1|5|U|2550, 5APN|1|5|U|2551, 5APN|1|5|A|2554, 5APN|1|5|U|2558, 5APN|1|5|U|2559, 5APN|1|5|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_008 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.132
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|5|A|2529
5APN|1|5|G|2530
5APN|1|5|C|2531
5APN|1|5|U|2532
*
5APN|1|5|A|2547
5APN|1|5|C|2548
5APN|1|5|G|2549
5APN|1|5|U|2550
5APN|1|5|U|2551
5APN|1|5|C|2552
5APN|1|5|U|2553
5APN|1|5|A|2554
5APN|1|5|G|2555
5APN|1|5|C|2556
5APN|1|5|A|2557
5APN|1|5|U|2558
5APN|1|5|U|2559
5APN|1|5|C|2560
5APN|1|5|A|2561
5APN|1|5|A|2562
5APN|1|5|G|2563
*
5APN|1|5|U|2578
5APN|1|5|G|2579
5APN|1|5|A|2580
5APN|1|5|U|2581
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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