J3_5APN_010
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 5APN|1|5|A|2887, 5APN|1|5|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_010 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1135
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|5|U|2886
5APN|1|5|A|2887
5APN|1|5|U|2888
5APN|1|5|C|2889
*
5APN|1|5|G|2914
5APN|1|5|U|2915
5APN|1|5|U|2916
*
5APN|1|5|A|2930
5APN|1|5|C|2931
5APN|1|5|U|2932
5APN|1|5|A|2933
5APN|1|5|A|2934
5APN|1|5|U|2935
5APN|1|5|A|2936
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
Coloring options: