J3_5APN_024
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 5APN|1|7|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_024 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1167
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5APN|1|7|C|9
5APN|1|7|C|10
5APN|1|7|A|11
5APN|1|7|U|12
5APN|1|7|A|13
5APN|1|7|U|14
*
5APN|1|7|A|66
5APN|1|7|G|67
*
5APN|1|7|U|111
5APN|1|7|G|112
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21-A
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