J3_5APN_027
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 5APN|1|5|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_027 not in the Motif Atlas
- Homologous match to J3_8CRE_013
- Geometric discrepancy: 0.1243
- The information below is about J3_8CRE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
5APN|1|5|U|1479
5APN|1|5|G|1480
5APN|1|5|A|1481
5APN|1|5|A|1482
5APN|1|5|G|1483
5APN|1|5|U|1484
5APN|1|5|G|1485
*
5APN|1|5|C|1857
5APN|1|5|A|1858
5APN|1|5|A|1859
*
5APN|1|5|U|1871
5APN|1|5|C|1872
5APN|1|5|U|1873
5APN|1|5|A|1874
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
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