J3_5D8B_017

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5D8B|1|YC|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5D8B_017 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1137

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5D8B|1|YC|C|826
5D8B|1|YC|U|827
5D8B|1|YC|A|828
5D8B|1|YC|G|829
*
5D8B|1|YC|C|857
5D8B|1|YC|G|858
5D8B|1|YC|A|859
5D8B|1|YC|A|860
5D8B|1|YC|G|861
*
5D8B|1|YC|C|868
5D8B|1|YC|G|869
5D8B|1|YC|U|870
5D8B|1|YC|U|871
5D8B|1|YC|A|872
5D8B|1|YC|A|873
5D8B|1|YC|G|874

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain EC

30S ribosomal protein S8

Chain YB

30S ribosomal protein S2