J3_5D8B_032

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5D8B|1|ZC|A|2518, 5D8B|1|ZC|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5D8B_032 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1278

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5D8B|1|ZC|C|2517
5D8B|1|ZC|A|2518
5D8B|1|ZC|U|2519
5D8B|1|ZC|C|2520
*
5D8B|1|ZC|G|2545
5D8B|1|ZC|U|2546
5D8B|1|ZC|U|2547
*
5D8B|1|ZC|A|2561
5D8B|1|ZC|U|2562
5D8B|1|ZC|U|2563
5D8B|1|ZC|A|2564
5D8B|1|ZC|A|2565
5D8B|1|ZC|A|2566
5D8B|1|ZC|G|2567

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain DB

50S ribosomal protein L13

Chain EB

50S ribosomal protein L14