J3_5D8B_038
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5D8B|1|UC|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_038 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1221
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5D8B|1|UC|U|672
5D8B|1|UC|G|673
*
5D8B|1|UC|C|717
5D8B|1|UC|G|718
5D8B|1|UC|C|719
5D8B|1|UC|C|720
5D8B|1|UC|G|721
5D8B|1|UC|A|722
5D8B|1|UC|U|723
5D8B|1|UC|G|724
5D8B|1|UC|G|725
*
5D8B|1|UC|C|732
5D8B|1|UC|A|733
5D8B|1|UC|G|734
Current chains
- Chain UC
- 16S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain GA
- 30S ribosomal protein S6
- Chain LA
- 30S ribosomal protein S11
- Chain PA
- 30S ribosomal protein S15
- Chain SA
- 30S ribosomal protein S18
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