J3_5D8B_047
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5D8B|1|VC|C|34, 5D8B|1|VC|U|448, 5D8B|1|VC|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_047 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0877
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5D8B|1|VC|C|32
5D8B|1|VC|U|33
5D8B|1|VC|C|34
5D8B|1|VC|G|35
*
5D8B|1|VC|C|445
5D8B|1|VC|G|446
5D8B|1|VC|A|447
5D8B|1|VC|U|448
5D8B|1|VC|A|449
5D8B|1|VC|G|450
5D8B|1|VC|C|451
5D8B|1|VC|G|452
5D8B|1|VC|C|453
5D8B|1|VC|A|454
5D8B|1|VC|C|455
5D8B|1|VC|C|456
5D8B|1|VC|A|457
5D8B|1|VC|G|458
5D8B|1|VC|U|459
5D8B|1|VC|A|460
5D8B|1|VC|C|461
*
5D8B|1|VC|G|468
5D8B|1|VC|G|469
5D8B|1|VC|A|470
5D8B|1|VC|A|471
5D8B|1|VC|A|472
5D8B|1|VC|G|473
Current chains
- Chain VC
- 23S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L23
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