J3_5D8B_058
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5D8B|1|YC|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_058 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1041
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5D8B|1|YC|C|586
5D8B|1|YC|G|587
5D8B|1|YC|G|588
*
5D8B|1|YC|C|651
5D8B|1|YC|U|652
5D8B|1|YC|A|653
5D8B|1|YC|G|654
5D8B|1|YC|A|655
*
5D8B|1|YC|U|751
5D8B|1|YC|G|752
5D8B|1|YC|A|753
5D8B|1|YC|C|754
5D8B|1|YC|G|755
Current chains
- Chain YC
- 16S ribosomal RNA
Nearby chains
- Chain EC
- 30S ribosomal protein S8
- Chain IC
- 30S ribosomal protein S12
- Chain LC
- 30S ribosomal protein S15
- Chain NC
- 30S ribosomal protein S17
Coloring options: