J3_5D8B_074
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5D8B|1|ZC|G|2833, 5D8B|1|ZC|U|2884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_074 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1844
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5D8B|1|ZC|C|2814
5D8B|1|ZC|C|2815
*
5D8B|1|ZC|G|2831
5D8B|1|ZC|U|2832
5D8B|1|ZC|G|2833
5D8B|1|ZC|G|2834
5D8B|1|ZC|A|2835
5D8B|1|ZC|U|2836
*
5D8B|1|ZC|A|2882
5D8B|1|ZC|A|2883
5D8B|1|ZC|U|2884
5D8B|1|ZC|C|2885
5D8B|1|ZC|G|2886
Current chains
- Chain ZC
- 23S ribosomal RNA
Nearby chains
- Chain HB
- 50S ribosomal protein L17
- Chain JB
- 50S ribosomal protein L19
- Chain UB
- 50S ribosomal protein L32
- Chain XA
- 50S ribosomal protein L3
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