J3_5DM6_006

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5DM6|1|X|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.07

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5DM6|1|X|C|1306
5DM6|1|X|A|1307
5DM6|1|X|A|1308
5DM6|1|X|G|1309
*
5DM6|1|X|C|1605
5DM6|1|X|G|1606
5DM6|1|X|C|1607
5DM6|1|X|A|1608
5DM6|1|X|A|1609
5DM6|1|X|A|1610
5DM6|1|X|C|1611
*
5DM6|1|X|G|1620
5DM6|1|X|U|1621
5DM6|1|X|G|1622

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34