J3_5DM6_007

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_007 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1355

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|U|2091
5DM6|1|X|U|2092
5DM6|1|X|G|2093
*
5DM6|1|X|C|2196
5DM6|1|X|U|2197
5DM6|1|X|A|2198
5DM6|1|X|A|2199
5DM6|1|X|C|2200
*
5DM6|1|X|G|2223
5DM6|1|X|G|2224
5DM6|1|X|A|2225
5DM6|1|X|C|2226
5DM6|1|X|C|2227
5DM6|1|X|G|2228

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28