J3_5DM6_009

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5DM6|1|X|A|2518, 5DM6|1|X|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_009 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.0866

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5DM6|1|X|C|2517
5DM6|1|X|A|2518
5DM6|1|X|U|2519
5DM6|1|X|C|2520
*
5DM6|1|X|G|2545
5DM6|1|X|U|2546
5DM6|1|X|U|2547
*
5DM6|1|X|A|2561
5DM6|1|X|U|2562
5DM6|1|X|U|2563
5DM6|1|X|A|2564
5DM6|1|X|A|2565
5DM6|1|X|A|2566
5DM6|1|X|G|2567

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L14