J3_5FLX_004
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- 5FLX|1|1|A|1679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FLX_004 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.2867
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|C|1218
5FLX|1|1|C|1219
5FLX|1|1|A|1220
5FLX|1|1|G|1221
*
5FLX|1|1|C|1645
5FLX|1|1|C|1646
5FLX|1|1|A|1647
5FLX|1|1|G|1648
5FLX|1|1|U|1649
5FLX|1|1|A|1650
5FLX|1|1|A|1651
*
5FLX|1|1|U|1673
5FLX|1|1|G|1674
5FLX|1|1|A|1675
5FLX|1|1|U|1676
5FLX|1|1|U|1677
5FLX|1|1|A|1678
5FLX|1|1|A|1679
5FLX|1|1|G|1680
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN S5
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain c
- 40S RIBOSOMAL PROTEIN S28
Coloring options: