J3_5FLX_007
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 5FLX|1|1|G|1274, 5FLX|1|1|G|1507
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FLX_007 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1367
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5FLX|1|1|C|1272
5FLX|1|1|C|1273
5FLX|1|1|G|1274
5FLX|1|1|G|1275
5FLX|1|1|A|1276
5FLX|1|1|C|1277
*
5FLX|1|1|G|1320
5FLX|1|1|G|1321
5FLX|1|1|G|1322
5FLX|1|1|U|1323
5FLX|1|1|G|1324
*
5FLX|1|1|U|1504
5FLX|1|1|U|1505
5FLX|1|1|A|1506
5FLX|1|1|G|1507
5FLX|1|1|A|1508
5FLX|1|1|U|1509
5FLX|1|1|G|1510
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain f
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
Coloring options: