3D structure

PDB id
5GAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with a translocating SecYEG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.33 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
5GAE|1|A|A|504, 5GAE|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5GAE_012 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.1112
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5GAE|1|A|G|30
5GAE|1|A|C|31
*
5GAE|1|A|G|474
5GAE|1|A|C|475
5GAE|1|A|G|476
5GAE|1|A|A|477
5GAE|1|A|A|478
5GAE|1|A|A|479
5GAE|1|A|A|480
5GAE|1|A|G|481
5GAE|1|A|A|482
5GAE|1|A|A|483
5GAE|1|A|C|484
*
5GAE|1|A|G|496
5GAE|1|A|A|497
5GAE|1|A|G|498
5GAE|1|A|U|499
5GAE|1|A|G|500
5GAE|1|A|A|501
5GAE|1|A|A|502
5GAE|1|A|A|503
5GAE|1|A|A|504
5GAE|1|A|A|505
5GAE|1|A|G|506
5GAE|1|A|A|507
5GAE|1|A|A|508
5GAE|1|A|C|509
5GAE|1|A|C|510

Current chains

Chain A
23S rRNA

Nearby chains

Chain R
50S ribosomal protein L20
Chain T
50S ribosomal protein L22
Chain V
50S ribosomal protein L24
Chain g
Protein translocase subunit SecY

Coloring options:


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