J3_5GAK_008
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5GAK|1|1|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5GAK_008 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.21
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5GAK|1|1|C|2664
5GAK|1|1|U|2665
5GAK|1|1|C|2666
*
5GAK|1|1|G|2690
5GAK|1|1|A|2691
5GAK|1|1|A|2692
*
5GAK|1|1|U|2701
5GAK|1|1|A|2702
5GAK|1|1|A|2703
5GAK|1|1|A|2704
5GAK|1|1|A|2705
5GAK|1|1|G|2706
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain B
- Transfer RNA; tRNA
- Chain H
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L11-A
- Chain V
- 60S ribosomal protein L21-A
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