J3_5GAK_010
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CAU*AGAUGUA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 5GAK|1|1|U|3319
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5GAK_010 not in the Motif Atlas
- Geometric match to J3_5TBW_069
- Geometric discrepancy: 0.2075
- The information below is about J3_5TBW_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_42762.1
- Basepair signature
- cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5GAK|1|1|C|3298
5GAK|1|1|A|3299
5GAK|1|1|U|3300
*
5GAK|1|1|A|3314
5GAK|1|1|G|3315
5GAK|1|1|A|3316
5GAK|1|1|U|3317
5GAK|1|1|G|3318
5GAK|1|1|U|3319
5GAK|1|1|A|3320
*
5GAK|1|1|U|3387
5GAK|1|1|C|3388
5GAK|1|1|U|3389
5GAK|1|1|G|3390
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L31-A
Coloring options: