J3_5HCR_016
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 5HCR|1|1a|U|1222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_016 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1229
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1a|C|1219
5HCR|1|1a|A|1220
5HCR|1|1a|A|1221
5HCR|1|1a|U|1222
5HCR|1|1a|G|1223
*
5HCR|1|1a|C|1278
5HCR|1|1a|C|1279
5HCR|1|1a|C|1280
5HCR|1|1a|A|1281
5HCR|1|1a|G|1282
5HCR|1|1a|U|1283
5HCR|1|1a|U|1284
5HCR|1|1a|C|1285
*
5HCR|1|1a|G|1316
5HCR|1|1a|C|1317
5HCR|1|1a|C|1318
5HCR|1|1a|G|1319
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1m
- 30S ribosomal protein S13
- Chain 1u
- 30S ribosomal protein Thx
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