J3_5HCR_042
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5HCR|1|1A|G|2842, 5HCR|1|1A|A|2844
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_042 not in the Motif Atlas
- Homologous match to J3_4WF9_021
- Geometric discrepancy: 0.179
- The information below is about J3_4WF9_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HCR|1|1A|C|2823
5HCR|1|1A|C|2824
*
5HCR|1|1A|G|2840
5HCR|1|1A|U|2841
5HCR|1|1A|G|2842
5HCR|1|1A|G|2843
5HCR|1|1A|A|2844
5HCR|1|1A|U|2845
*
5HCR|1|1A|A|2891
5HCR|1|1A|A|2892
5HCR|1|1A|U|2893
5HCR|1|1A|C|2894
5HCR|1|1A|G|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
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