J3_5IT8_011

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5IT8|1|AA|U|1240, 5IT8|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IT8_011 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.0296

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5IT8|1|AA|C|1237
5IT8|1|AA|A|1238
5IT8|1|AA|A|1239
5IT8|1|AA|U|1240
5IT8|1|AA|G|1241
*
5IT8|1|AA|C|1296
5IT8|1|AA|G|1297
5IT8|1|AA|U|1298
5IT8|1|AA|A|1299
5IT8|1|AA|G|1300
5IT8|1|AA|U|1301
5IT8|1|AA|C|1302
5IT8|1|AA|C|1303
*
5IT8|1|AA|G|1334
5IT8|1|AA|U|1335
5IT8|1|AA|C|1336
5IT8|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13