J3_5IT8_056
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5IT8|1|BA|C|48, 5IT8|1|BA|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IT8_056 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0575
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IT8|1|BA|G|46
5IT8|1|BA|C|47
5IT8|1|BA|C|48
5IT8|1|BA|U|49
5IT8|1|BA|A|50
5IT8|1|BA|A|51
5IT8|1|BA|C|52
*
5IT8|1|BA|G|359
5IT8|1|BA|G|360
5IT8|1|BA|G|361
5IT8|1|BA|G|362
5IT8|1|BA|A|363
5IT8|1|BA|A|364
5IT8|1|BA|U|365
5IT8|1|BA|A|366
5IT8|1|BA|U|367
*
5IT8|1|BA|A|393
5IT8|1|BA|G|394
5IT8|1|BA|C|395
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BL
- 30S ribosomal protein S12
- Chain BP
- 30S ribosomal protein S16
- Chain DH
- 50S ribosomal protein L9
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