J3_5J8B_019
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5J8B|1|a|U|849, 5J8B|1|a|A|851
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_019 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0522
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5J8B|1|a|C|810
5J8B|1|a|U|811
5J8B|1|a|A|812
5J8B|1|a|G|813
*
5J8B|1|a|C|835
5J8B|1|a|G|836
5J8B|1|a|A|837
5J8B|1|a|A|838
5J8B|1|a|G|839
*
5J8B|1|a|C|846
5J8B|1|a|G|847
5J8B|1|a|U|848
5J8B|1|a|U|849
5J8B|1|a|A|850
5J8B|1|a|A|851
5J8B|1|a|G|852
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S8
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