J3_5J8B_028
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 5J8B|1|a|U|1222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_028 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.0973
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|a|C|1219
5J8B|1|a|A|1220
5J8B|1|a|A|1221
5J8B|1|a|U|1222
5J8B|1|a|G|1223
*
5J8B|1|a|C|1278
5J8B|1|a|C|1279
5J8B|1|a|C|1280
5J8B|1|a|A|1281
5J8B|1|a|G|1282
5J8B|1|a|U|1283
5J8B|1|a|U|1284
5J8B|1|a|C|1285
*
5J8B|1|a|G|1316
5J8B|1|a|C|1317
5J8B|1|a|C|1318
5J8B|1|a|G|1319
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
- Chain u
- 30S ribosomal protein Thx
- Chain y
- Transfer RNA; tRNA
Coloring options: