J3_5J8B_036

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5J8B|1|a|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_036 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1268

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5J8B|1|a|C|968
5J8B|1|a|U|969
5J8B|1|a|U|970
5J8B|1|a|G|971
5J8B|1|a|A|972
5J8B|1|a|C|973
5J8B|1|a|A|974
5J8B|1|a|U|975
*
5J8B|1|a|A|1027
5J8B|1|a|C|1028
5J8B|1|a|A|1029
5J8B|1|a|G|1030
*
5J8B|1|a|C|1192
5J8B|1|a|U|1193
5J8B|1|a|U|1194
5J8B|1|a|A|1195
5J8B|1|a|C|1196
5J8B|1|a|G|1197

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z